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About us
 

The Bioinformatics Centre at KAU, Thrissur was set up in 1995 as the 23rd Distributed Information Sub Centre (DISC) under the Biotechnology Information System Network (BTIS Net) programme, of the Department of Biotechnology, Government of India. The Centre was upgraded to DIC during 2004 with the objective to support Biotechnology research. The centre has shifted to new premises in September 2006 which also has facilities for wet lab work. The communication facilities at the centre is strengthened by the 3Mbps leased line internet connectivity from AIRTEL. The Centre conducts training programmes in Bioinformatics for scientists working in the University and procures databases in the field of Agriculture and related domains. A (2+2) credit course in Bioinformatics is offered to the Postgraduate students of Centre for Plant Biotechnology and Molecular Biology.  

 
Publlished papers
  • Raji Radhakrishnan.S, Keshavachandran.R, “Insilico Phylogenetic analysis and Homology modeling of DAT metabolic enzyme in Catharanthus roseus G.Don”. Paper presented in the National symposium on Bioinformatics, 1-2nd February 2006 at College of Fisheries, Mangalore.

  • Raji Radhakrishnan S, Snitha S and R. Keshavachandran., “In silico analysis of proteins of importance in Biocontrol agents”, Presented at the International Conference on Bioinformatics held on Dec 18th-20th, 2006 at New Delhi.

  • Rejith kumar S.L  and R.Keshavachandran., “RiceInfo: Genetic database on Rice”. Presented at the 2nd International Rice Congress held at New Delhi on October 9th -13th , 2006.

  • Rejith kumar S.L and R.Keshavachandran., SPICEINFO - A database on Indian Spices. Presented at the International Conference on Bioinformatics held on Dec 18th-20th, 2006 at New Delhi.

  • Smitha Nair and R.Keshavachandran., Assessment of Genetic Variability in Chakkarakolli (Gymnema sylcestre R. Br) using Morphological and Biochemical markers., Journal of Tropical Agriculture. 44 (2006) 64-67.

  • Smitha Nair and R.Keshavachandran., Molecular diversity in Chakkarakolli (Gymnema sylcestre R. Br) Assessed through Isozyme and RAPD analysis., 44 (2006)Journal of Tropical Agriculture .31-37.

  • Sujatha R., Mallika V.K. and Nazeem P.A. 2006 Peroxidase polymorphism for fingerprinting of black pepper (Piper nigrum L.) varieties and micropropogated clones. Indian J. Genetics., 66(3): 261-262.

  • Raji Radhakrishnan S, Snitha S and R.Keshavachandran., “In silico approaches to  study active compounds in medicinal plants”. Presented at the International Conference on Bioinformatics held on Dec 18th-20th, 2006 at New Delhi.

  • Alishya Joy and and R.Keshavachandran., “Predicting functionally important residues in Cysteine Proteinases involved in Programmed Cell Death of plants”. Presented at the International Symposium on Structural Bioinformatics held on Jan 12th, 2008 at Coimbatore.

  • Reena.N and R.Keshavachandran., “In silico Analysis of Insulin like proteins in plants”. Presented at the International Symposium on Structural Bioinformatics held on Jan 12th, 2008 at Coimbatore.

  • Dileep K.V., Abhilash Joseph and R.Keshavachandran, “Imperativeness of Coronatine- Intensive 1 protein in Jasmonate signaling mechanism: A computational biology scenario”. Presented at the national Seminar on Advances in Structural and Functional Bioinformatics held on Jan 25th, 2008 at Coimbatore.

  • Abhilash Joseph., Dileep K.V and R.Keshavachandran, “In silico Modeling of N-acyl homoserine lactose (AHL) receptor for studying the interaction of AHL in Quorum sensing mechanism of Sinorhizobium meliloti”. Presented at the national Seminar on Advances in Structural and Functional Bioinformatics held on Jan 25th, 2008 at Coimbatore.

  • Remya C. Venu, R. Keshavachandran, Shidhi P R and Nancy Thomas, “A Computational Approach to Evaluate the Efficacy of Natural Antioxidants in Type II Diabetes”. Presented at Motif’09, National seminar held on Sep 17th, 2009 at Bharathiar University, Coimbatore.

  • Shidhi.P.R, R. Keshavachandran, Remya.C.Venu and Nancy Thomas, “Computational approaches to reveal the Anticancer property of Piper nigrum”. Presented at Motif’09, National seminar held on Sep 17th, 2009 at Bharathiar University, Coimbatore.

  • Nancy Thomas, R. Keshavachandran , Remya C Venu and Shidhi P R, “Novel Target and Emerging Remedies for Alzheimer’s disease”. Presented at Motif’09, National seminar held on Sep 17th, 2009 at Bharathiar University, Coimbatore.

 

Databases in DIC
Acqired
Biotechnology Abstracts
 

Abstracts of scientific and technical research in the field of Biotechnology from over 1200 of the world's leading scientific and technological journals. It covers all aspects of biotechnology including genetic engineering, biochemical engineering, fermentation, cell culture and waste disposal as reported in over 1,100 scientific journals and in the patents literature.

 
     Broad Functional Area: Biotechnology
 
Biological & Agricultural Index
 

Provides indexing of over 225 of the key international English language periodicals in the biological and agricultural sciences. Its subject area includes agricultural chemicals, economics, engineering, animal husbandry, biochemistry, biology, biotechnology, botany, cytology, ecology, entomology, environmental science, fishery science, food science, forestry, genetics, horticulture, marine biology, microbiology, physiology, soil science, veterinary medicine and zoology.

 
     Broad Functional Area: Biology & Agriculture
 
Agricola
 

Contains archival file of the Agricola database, citations to agricultural literature acquired by the U.S. National Agricultural Library and sub files of related subject, such as food and nutrition, agricultural economics, parasitology etc. It consists of over 3,300,000 citations to journal articles, monographs, theses, patents, software, audio-visual materials and technical reports related to all aspects of Agriculture.

 
     Broad Functional Area: Agriculture
 
Agrisearch
 
     Contains database and research projects on Agriculture, food and nutrition, Fisheries etc.
 
     Broad Functional Area: Agriculture
In house
Kaubiotechprotocols
 

Broad Subject Area: It gives the protocols in Biotechnology developed at KAU. It provides information on the species of crop, its family, habit, status, relatives, area under cultivation, studies carried out, nature of explants, mode of generation, rate of multiplication, rooting, duration from culture, total number of plants produced, field evaluation results, status of protocol, transfer of technology, future plan of action, biodata of the custodian of protocol etc.

 
     Broad Functional Area: Biotechnology
 
Improved varieties of crops released by KAU
 

Broad Subject Area: It consists of the cultural aspects of the crop, varieties released by KAU, its varietal description and sum of research carried out on the crop by KAU along with photos intended to benefit the researchers, students, farmers, extension workers and planters as well.

 
     Broad Functional Area: Agriculture
 
CD ROM on Indian Spices
 

Broad Subject Area: It provides information on all Indian spices including black pepper, ginger, cardamom, vanilla, saffron, turmeric, clove, nutmeg etc . The ROM also have Search facility.

 
     Broad functional area: Agriculture
 
Database on Rice (RiceInfo)
 

Broad Subject Area: It provides information on all aspects rice, it's cultivation, management and information on the research in Biotechnology and Bioinformatics area. Special reference to rice cultivation at Kerala.

 
      Broad functional area: Agriculture
 
Colleges & Research stations of KAU
 
     Broad Subject Area: provides a directory of different colleges and research stations of KAU
 
     Broad Functional Area: Directory
 
Kausis
 
    Broad Subject area: The database consists of information on all the scientists working in KAU
 
    Broad Functional Area: Personal directory
 
Kaubiotechpersonnel 
 
   Broad Subject Area: It consists of the bio-data of the scientists working in the field of Biotechnology at KAU
 
   Broad Functional Area: Personal directory
 
 

Future activities would be to initiate Bioinformatics research in collaboration with Biotechnology, to create a digitized database of the existing data on crop germplasm in the university, to obtain copyright and update the existing databases. The Centre proposes to conduct training programmes for staff working in neighbouring institutions also. Other activities would be enabling of CD-ROM search facility locally on the databases developed for university level users, to enable an E print facility to act as a repository for research articles by integrating data generated from Biotechnology division and other affiliated research stations, development of teaching aids [practical manual] in Bioinformatics, Open source journal accessibility for M.Sc. students, and procurement of Books and Journals in Bioinformatics. Steps are being taken to introduce a course on Bioinformatics for PhD students for which the draft syllabus has been formulated and submitted for approval

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